Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish.
Sokol, A. M., Uszczynska-Ratajczak, B., Collins, M. M., Bazala, M., Topf, U.,.... & Chacinska, A. (2018)
PLoS Genetics
Rapid, experience-dependent translation of neurogranin enables memory encoding.
Jones, K. J., Templet, S., Zemoura, K., Kuzniewska, B., Pena, F. X., Hwang, H., ... & Lewis, M. (2018)
Proceedings of the National Academy of Sciences, 115(25), E5805-E5814
Neuroligin 1, 2, and 3 Regulation at the Synapse: FMRP-Dependent Translation and Activity-Induced Proteolytic Cleavage.
Chmielewska, J. J., Kuzniewska, B., Milek, J., Urbanska, K., & Dziembowska, M. (2018)
Molecular neurobiology, 1-19
Neurodevelopmental phenotype caused by a de novo PTPN4 single nucleotide variant disrupting protein localization in neuronal dendritic spines.
Szczałuba, K., Chmielewska, J. J., Sokolowska, O., Rydzanicz, M., Szymańska, K., Feleszko, W., ... & Bargeł, E. (2018)
Clinical genetics
Novel calcineurin A (PPP3CA) variant associated with epilepsy, constitutive enzyme activation and downregulation of protein expression.
Rydzanicz, M., Wachowska, M., Cook, E. C., Lisowski, P., Kuźniewska, B., Szymańska, K., ... & Koppolu, A. (2018)
European Journal of Human Genetics, 1
The level of microRNA 21 is upregulated by rapamycin in serum of tuberous sclerosis complex patients and subependymal giant cell astrocytoma (SEGA)-derived cell cultures
Kuzniewska, B., Sadowski, K., Urbanska, K., Urbanska, M., Kotulska, K., Liszewska, E., ... & Dziembowska, M. (2018)
Folia Neuropathologica, 56(3), 167-174
Long term effects of superoxide and DNA repair on lizard telomeres.
Olsson, M., Friesen, C. R., Rollings, N., Sudyka, J., Lindsay, W., Whittingtion, C. M., & Wilson, M. (2018)
Molecular ecology
mRNAs biotinylated within the 50 cap and protected against decapping: new tools to capture RNA – protein complexes
Bednarek, S., Madan, V., Sikorski, P. J., Bartenschlage, R., Kowalska, J., & Jemielity, J. (2018).
Philosophical Transactions of The Royal Society B, 373
Microchannel plate cross-talk mitigation for spatial autocorrelation measurements
Lipka, M., Parniak, M., & Wasilewski, W. (2018).
Applied Physics Letters, 112(21), 211105.
Visibility-based hypothesis testing using higher-order optical interference.
Jachura, M., Jarzyna, M., Lipka, M., Wasilewski, W., & Banaszek, K. (2018).
Physical review letters, 120(11), 110502.
Spatially resolved control of fictitious magnetic fields in a cold atomic ensemble
Leszczyński, A., Mazelanik, M., Lipka, M., Parniak, M., Dąbrowski, M., & Wasilewski, W. (2018).
Optics letters, 43(5), 1147-1150.
Enhanced photoelectrochemical CO2-reduction system based on mixed Cu2O–nonstoichiometric TiO2 photocathode.
Szaniawska, E., Bienkowski, K., Rutkowska, I. A., Kulesza, P. J., & Solarska, R. (2018).
Catalysis Today, 300, 145-151.
Motor recruitment to the TIM23 channel’s lateral gate restricts polypeptide release into the inner membrane.
Schendzielorz, A. B., Bragoszewski, P., Naumenko, N., Gomkale, R., Schulz, C., Guiard, B., ... & Rehling, P. (2018)
Nature communications, 9(1), 4028
ExciTides: NTP-derived probes for monitoring pyrophosphatase activity based on excimer-to-monomer transitions
Wanat, P., Kasprzyk, R., Kopcial, M., Sikorski, P. J., Strzelecka, D., Jemielity, J., & Kowalska, J. (2018)
Chemical Communications, 54(70), 9773-9776
5′-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes
Wojtczak, B. A., Sikorski, P. J., Fac-Dabrowska, K., Nowicka, A., Warminski, M., Kubacka, D., ... & Jemielity, J. (2018).
Journal of the American Chemical Society, 140(18), 5987-5999
Exploring the potential of phosphotriazole 5′ mRNA cap analogues as efficient translation initiators.
Walczak, S., Sikorski, P. J., Kasprzyk, R., Kowalska, J., & Jemielity, J. (2018).
Organic & biomolecular chemistry, 16(36), 6741-6748
Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Essig, K., Kronbeck, N., Guimaraes, J. C., Lohs, C., Schlundt, A., Hoffmann, A., ... & Jemielity, J. (2018)
Nature communications, 9
Orientation of photosystem I on graphene through cytochrome c553 leads to improvement in photocurrent generation.
Kiliszek, M., Harputlu, E., Szalkowski, M., Kowalska, D., Unlu, C. G., Haniewicz, P., ... & Ocakoglu, K.
Journal of Materials Chemistry A.
A Stable Crystalline Copper(I)–N2O Complex Stabilized as the Salt of a Weakly Coordinating Anion
V. Zhuravlev, P. J. Malinowski (2018)
Angewandte Chemie International Edition
Energy Level Alignment at Interfaces Between Au (111) and Thiolated Oligophenylenes of Increasing Chain Size: Theoretical Evidence of Pinning Effects
Diez‐Cabanes, V., Gonzalez, S. R., Osella, S., Cornil, D., Van Dyck, C., & Cornil, J. (2018)
Advanced Theory and Simulations, 1(3), 1700020
Atomistic picture of fluorescent probes with hydrocarbon tails in lipid bilayer membranes: an investigation of selective affinities and fluorescent anisotropies in different environmental phases
Knippenberg, S., Fabre, G., Osella, S., Di Meo, F., Paloncýová, M., Ameloot, M., & Trouillas, P. (2018)
Langmuir
Large sensitivity in land carbon storage due to geographical and temporal variation in the thermal response of photosynthetic capacity
Mercado, L. M., Medlyn, B. E., Huntingford, C., Oliver, R. J., Clark, D. B., Sitch, S., ... & Cox, P. M. (2018)
New Phytologist, 218(4), 1462-1477
Human-mediated dispersal of cats in the Neolithic Central Europe
Baca, M., Popović, D., Panagiotopoulou, H., Marciszak, A., Krajcarz, M., Krajcarz, M. T., ... & Nadachowski, A. (2018)
Heredity, 1
Identification of prion protein-derived peptides of potential use in Alzheimer’s disease therapy
Nieznanska, H., Bandyszewska, M., Surewicz, K., Zajkowski, T., Surewicz, W. K., & Nieznanski, K. (2018)
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease, 1864(6), 2143-2153
Ruthenium Olefin Metathesis Catalysts Systematically Modified in Chelating Benzylidene Ether Fragment: Experiment and Computations
Grela, K., Zieliński, A., Szczepaniak, G., Gajda, R., Woźniak, K., Trzaskowski, B., ... & Kajetanowicz, A. (2018)
European Journal of Inorganic Chemistry
Thermodynamics of the pseudo‐knot in helix 18 of 16S ribosomal RNA
Wojciechowska, M., Dudek, M., & Trylska, J. (2018)
Biopolymers, 109(4), e23116
Improved Force Fields for Peptide Nucleic Acids with Optimized Backbone Torsion Parameters
Jasiński, M., Feig, M., & Trylska, J. (2018)
Journal of chemical theory and computation
Molecular dynamics simulations suggest why the A2058G mutation in 23S RNA results in bacterial resistance against clindamycin
Kulczycka-Mierzejewska, K., Sadlej, J., & Trylska, J. (2018).
Journal of molecular modeling, 24(8), 191
„GapRepairer–a server to model a structural gap and validate it using topological analysis.”
Jarmolinska, A. I., Kadlof, M., Dabrowski-Tumanski, P., & Sulkowska, J. I. (2018).
Bioinformatics, 1, 8
Unequal misses during the flash-induced advancement of photosystem II: effects of the S-state and acceptor side cycles
Pham, L.V., Janna Olmos J.D., Chernev, P., Kargul, J, Messinger, J. (2018)
Photosynthesis Res.
KnotGenome: a server to analyze entanglements of chromosomes
Sulkowska, J. I., Niewieczerzal, S., Jarmolinska, A. I., Siebert, J. T., Virnau, P., & Niemyska, W. (2018)
Nucleic acids research
Charged N-terminus of Influenza Fusion Peptide Facilitates Membrane Fusion
Worch, R., Dudek, A., Krupa, J., Szymaniec, A., & Setny, P. (2018)
International journal of molecular sciences, 19(2), 578
Water-mediated conformational preselection mechanism in substrate binding cooperativity to protein kinase A
Setny, P., & Wiśniewska, M. D. (2018)
A. Proceedings of the National Academy of Sciences, 115(15), 3852-3857
Quantitative 3-D morphometric analysis of individual dendritic spines
Basu, S., Saha, P. K., Roszkowska, M., Magnowska, M., Baczynska, E., Das, N., ... & Wlodarczyk, J. (2018)
Scientific reports, 8(1), 3545
Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
Al Bkhetan, Z., & Plewczynski, D. (2018)
Scientific reports, 8(1), 5217
Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
Al Bkhetan, Z., & Plewczynski, D. (2018)
Scientific reports, 8(1), 5217
Inhibition of protein disulfide isomerase induces differentiation of acute myeloid leukemia cells
Chlebowska-Tuz, J., Sokolowska, O., Gaj, P., Lazniewski, M., Firczuk, M., Borowiec, K., ... & Ramji, K. (2018)
Haematologica, haematol-2018
A stable crystalline Cu (I)‐N2O complex stabilized as the salt of a weakly coordinating anion
Zhuravlev, V., & Malinowski, P. J. (2018)
Angewandte Chemie International Edition
Compressed Sampling in NMR spectroscopy
Kazimierczuk, K. (2018)
eMagRes, 1-8
Swept Coherence Transfer for Quantitative Heteronuclear 2D NMR
Urbańczyk, M., Shchukina, A., & Kazimierczuk, K. (2018)
Journal of Magnetic Resonanc
N-Heterocyclic Carbene-Catalyzed Olefination of Aldehydes with Vinyliodonium Salts To Generate α, β-Unsaturated Ketones
Rajkiewicz, A. A., & Kalek, M. (2018)
Organic letters, 20(7), 1906-1909
Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis
Mugridge, J. S., Tibble, R. W., Ziemniak, M., Jemielity, J., & Gross, J. D. (2018)
Nature communications, 9(1), 1152
MicroRNA Analysis Using the Quantitative Real-Time PCR Reaction
Kotlarek, M., Kubiak, A., Jażdżewski, K., & Wójcicka, A. (2018)
In miRNA Biogenesis (pp. 69-85). Springer, New York, NY
MicroRNA Analysis Using Next-Generation Sequencing
Kolanowska, M., Kubiak, A., Jażdżewski, K., & Wójcicka, A. (2018)
In miRNA Biogenesis (pp. 87-101)
The rs2910164 Genetic Variant of miR-146a-3p Is Associated with Increased Overall Mortality in Patients with Follicular Variant Papillary Thyroid Carcinoma
Kotlarek, M., Kubiak, A., Czetwertyńska, M., Świerniak, M., Gierlikowski, W., Kolanowska, M., ... & Wójcicka, A. (2018)
International journal of molecular sciences 19, no. 3 (2018): 655
Probing the Effect of Six-Membered N-Heterocyclic Carbene—6-Mes—on the Synthesis, Structure and Reactivity of Me2MOR (NHC)(M= Ga, In) Complexes
Cybularczyk-Cecotka, M., Dąbrowska, A. M., Guńka, P. A., & Horeglad, P. (2018)
Inorganics, 6(1), 28
Silverland: the Realm of Compounds of Divalent Silver-and Why They are Interesting
Grochala, W. (2018)
Journal of Superconductivity and Novel Magnetism, 31(3), 737-752
New hydrogen-rich ammonium metal borohydrides, NH 4 [M (BH 4) 4], M= Y, Sc, Al, as potential H 2 sources
Starobrat, A., Jaroń, T., & Grochala, W. (2018)
Dalton Transactions, 47(13), 4442-4448
PDBsum: Structural summaries of PDB entries
Laskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S., & Thornton, J. M. (2018)
Protein Science, 27(1), 129-134
Dramatic enhancement of spin–spin coupling and quenching of magnetic dimensionality in compressed silver difluoride
Kurzydłowski, D., Derzsi, M., Barone, P., Grzelak, A., Struzhkin, V., Lorenzana, J., & Grochala, W. (2018)
Chemical Communications
Hypermethylation of TRIM59 and KLF14 influences cell death signaling in familial Alzheimer’s disease
Wezyk, M., Spólnicka, M., Pośpiech, E., Pepłońska, B., Zbieć-Piekarska, R., Ilkowski, J., ... & Skrzypczak, M. (2018)
Oxidative medicine and cellular longevity, 2018
PDBsum: Structural summaries of PDB entries
Laskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S., & Thornton, J. M. (2018)
Protein Science, 27(1), 129-134
Hypermethylation of TRIM59 and KLF14 influences cell death signaling in familial Alzheimer’s disease
Wezyk, M., Spólnicka, M., Pośpiech, E., Pepłońska, B., Zbieć-Piekarska, R., Ilkowski, J., ... & Skrzypczak, M. (2018)
Oxidative medicine and cellular longevity
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution
Mourad, R., Ginalski, K., Legube, G., & Cuvier, O. (2018)
Genome biology, 19(1), 34
Hydrolytic activity of human Nudt16 enzyme towards dinucleotide cap analogs and short capped oligonucleotides
Grzela, R., Nasilowska, K., Lukaszewicz, M., Tyras, M., Stepinski, J., Jankowska-Anyszka, M., ... & Darzynkiewicz, E. (2018)
RNA, rna-065698
Modified ARCA analogs providing enhanced translational properties of capped mRNAs
Kocmik, I., Piecyk, K., Rudzinska, M., Niedzwiecka, A., Darzynkiewicz, E., Grzela, R., & Jankowska-Anyszka, M. (2018)
Cell Cycle
Mitochondrial protein import stress and signaling
Samluk, L., Chroscicki, P., & Chacinska, A. (2018).
Current Opinion in Physiology
Optimizing deep-space optical communication under power constraints
Jarzyna, M., Zwoliński, W., Jachura, M., & Banaszek, K. (2018, February)
In Free-Space Laser Communication and Atmospheric Propagation XXX (Vol. 10524, p. 105240A)
The usability of the optical parametric amplification of light for high-angular-resolution imaging and fast astrometry
Kurek, A. R., Stachowski, A., Banaszek, K., & Pollo, A. (2018).
Monthly Notices of the Royal Astronomical Society, 476(2), 1696-1704
Enhanced photoelectrochemical CO2-reduction system based on mixed Cu2O–nonstoichiometric TiO2 photocathode
Szaniawska, E., Bienkowski, K., Rutkowska, I. A., Kulesza, P. J., & Solarska, R. (2018)
Catalysis Today, 300, 145-151
Hydrolytic activity of human Nudt16 enzyme towards dinucleotide cap analogs and short capped oligonucleotides
Grzela R, Nasilowska K, Lukaszewicz M, Tyras M, Stepinski J, Jankowska-Anyszka M, Bojarska E, Darzynkiewicz E.
RNA 2018 May; 24(5) 633-642
Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins.
Kowalski L, Bragoszewski P, Khmelinskii A, Glow E, Knop M, Chacinska A. (2018)
BMC Biol. 2018 Jun 22;16(1):66. doi: 10.1186/s12915-018-0536-1.
Controlling the charge transfer flow at the graphene/pyrene-nitrilotriacetic acid interface.
Osella S*, Kiliszek M, Harputlu E, Unlu CG, Ocakoglu K, Kargul J*, Trzaskowski B (2018)
J. Mater. Chem. C. 6, 5046-5054
Silverland: the Realm of Compounds of Divalent Silver—and Why They are Interesting.
Grochala, W. (2018).
Journal of Superconductivity and Novel Magnetism, 31(3), 737-752.
N-Heterocyclic Carbene-Catalyzed Olefination of Aldehydes with Vinyliodonium Salts to Generate α,β-Unsaturated Ketones
Rajkiewicz, A. A., & Kalek, M. (2018).
Organic Letters, 20(7), 1906-1909.
Noisy propagation of coherent states in a lossy Kerr medium.
Kunz, L., Paris, M. G., & Banaszek, K. (2018).
JOSA B, 35(2), 214-222.
Altered expression of GABA-A receptor subunits in the hippocampus of PTZ-kindled rats.
Szyndler, J., Maciejak, P., Kołosowska, K., Chmielewska, N., Skórzewska, A., Daszczuk, P., & Płaźnik, A. (2018).
Pharmacological Reports, 70(1), 14-21.
Climate pattern-scaling set for an ensemble of 22 GCMs – adding uncertainty to the IMOGEN version 2.0 impact system.
Zelazowski, P., Huntingford, C., Mercado, L. M., & Schaller, N. (2018).
Geoscientific Model Development, 11(2), 541.
Interactions of 2′-O-methyl oligoribonucleotides with the RNA models of the 30S subunit A-site
Jasiński, M., Kulik, M., Wojciechowska, M., Stolarski, R., & Trylska, J. (2018).
PloS one, 13(1), e0191138
Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies.
Kutner, J., Shabalin, I. G., Matelska, D., Handing, K., Gasiorowska, O., Sroka, P., ... & Minor, W.
Biochemistry 2018, 57 (6), 963-977, IF=2.938
Clinical and molecular characteristics of newly reported mitochondrial disease entity caused by biallelic PARS2 mutations.
Ciara, E., Rokicki, D., Lazniewski, M., Mierzewska, H., Jurkiewicz, E., Bekiesińska-Figatowska, M., ... & Kosińska, J. (2018).
Journal of human genetics, 63(4), 473.
Overactive BRCA1 Affects Presenilin 1 in Induced Pluripotent Stem Cell-Derived Neurons in Alzheimer’s Disease.
Wezyk, M., Szybinska, A., Wojsiat, J., Szczerba, M., Day, K., Ronnholm, H., ... & Ilkowski, J. (2018).
Journal of Alzheimer's Disease, 62(1), 175-202.
Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts
Grzela, R., Nusbaum, J., Fieulaine, S., Lavecchia, F., Desmadril, M., Nhiri, N., ... & Giglione, C. (2018).
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1866(2), 348-355.
7-Methylguanosine monophosphate analogues with 5′-(1,2,3-triazoyl) moiety: Synthesis and evaluation as the inhibitors of cNIIIB nucleotidase.
Kozarski, M., Kubacka, D., Wojtczak, B. A., Kasprzyk, R., Baranowski, M. R., & Kowalska, J. (2018).
Bioorganic & medicinal chemistry, 26(1), 191-199.
5-HT1A and 5-HT2A receptors affinity, docking studies and pharmacological evaluation of a series of 8-acetyl-7-hydroxy-4-methylcoumarin derivatives.
Ostrowska, K., Grzeszczuk, D., Głuch-Lutwin, M., Gryboś, A., Siwek, A., Leśniak, A., ... & Trzaskowski, B. (2018).
Bioorganic & medicinal chemistry, 26(2), 527-535.
Efficient glycosylation of natural Danshensu and its enantiomer by sugar and 2-deoxy sugar donors.
Sidoryk, K., Cmoch, P., Świtalska, M., Trzaskowski, B., Wietrzyk, J., & Cybulski, M. (2018).
Carbohydrate research, 460, 19-28.
Azoliniums, Adducts, NHCs and Azomethine Ylides: Divergence in Wanzlick Equilibrium and Olefin Metathesis Catalyst Formation.
Jolly, P. I., Marczyk, A., Małecki, P., Ablialimov, O., Trzybiński, D., Woźniak, K., ... & Grela, K. (2018).
Chemistry-A European Journal.
Boron-boron, carbon-carbon and nitrogen-nitrogen bonding in N-heterocyclic carbenes and their diazaboryl and triazole analogues; Wanzlick equilibria revisited.
Młodzikowska, K., Rajkiewicz, A. A., Grela, K., & Trzaskowski, B. (2018).
New Journal of Chemistry.
Thermodynamics of the pseudo‐knot in helix 18 of 16S ribosomal RNA
Wojciechowska, M., Dudek, M., & Trylska, J. (2018).
Biopolymers
Probing the effect of six-membered N-heterocyclic carbene—6-Mes—on the synthesis, structure and reactivity of Me2MOR (NHC)(M= Ga, In) complexes.
Cybularczyk-Cecotka, M., Dąbrowska, A. M., Guńka, P. A., & Horeglad, P. (2018).
Inorganics, 6(1), 28.
Mechanistic Insight into Enantioselective Palladium-Catalyzed Oxidative Carbocyclization-Borylation of Enallenes
Qiu, Y., Mendoza, A., Posevins, D., Himo, F., Kalek, M., & Bäckvall, J. E. (2018).
Chemistry-A European Journal, 24(10), 2433-2439.
Biophotovoltaic Systems Based on Photosynthetic Complexes.
Kargul, J., Bubak, G., & Andryianau, G. (2018).
In: Wandelt, K., (Ed.) Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry, vol. 7, pp 43–63. (book chapter).
Molecular Mechanisms of Photoadaptation of Photosystem I Supercomplex from an Evolutionary Cyanobacterial/Algal Intermediate
Haniewicz P., Abram M., Nosek L., Kirkpatrick J., El-Mohsnawy E., Janna Olmos J., Kouril R., Kargul J.* (2018)
Plant Physiol., 176, 1433–1451.
d-Peptides as inhibitors of PR3-membrane interactions.
Maximova, K., Venken, T., Reuter, N. and Trylska, J., 2018.
Biochimica et Biophysica Acta (BBA)-Biomembranes, 1860(2), pp.458-466.
Interactions of 2’-O-methyl oligoribonucleotides with the RNA models of the 30S subunit A-site.
Jasiński, M., Kulik, M., Wojciechowska, M., Stolarski, R. and Trylska, J., 2018.
PloS one, 13(1), p.e0191138.
Exploring Eukaryotic Versus Prokaryotic Ribosomal RNA Recognition with Aminoglycoside Derivatives.
Sabbavarapu, N.M., Pieńko, T., Zalman, B.H., Trylska, J. and BAASOV, T., 2018.
MedChemComm.
Preparation of polysomal fractions from mouse brain synaptoneurosomes and analysis of polysomal-bound mRNAs.
Kuzniewska, B., Chojnacka, M., Milek, J., & Dziembowska, M., 2018.
Journal of neuroscience methods, 293, 226-233.
Risk and Surrogate Benefit for Pediatric Phase 1 Trials in Oncology: A Systematic Review with Meta-analysis.
Waligora M, Koperny M, Jaeschke RR, Wozniak A, Piasecki J, Sliwka A, Mitus JW, Wasylewski MT, Strzebonska K, Polak M, Nowis D, Fergusson D, Bala MM, Kimmelman J.
PLoS Medicine, TBA (accepted)
Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species.
Topf, U., Suppanz, I., Samluk, L., Wrobel, L., Böser, A., Sakowska, P., Knapp, B., Pietrzyk, M.K., Chacinska, A. and Warscheid, B. (2018)
Nature Communications, 9(1), p.324.